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Table 1 CEXlist test set

From: Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns

GENE SYMBOL

DESCRIPTION

APLP1

Amyloid beta (A4) precursor-like protein 1

C6orf62

HBV X-transactivated gene 12 protein

C9orf3

aminopeptidase O

CLK3

CDC-like kinase 3

DEFA3

Defensin, alpha 3, neutrophil-specific

DUSP12

Dual specificity phosphatase 12

EEF1D

Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)

FSHR

Follicle stimulating hormone receptor

MNT

MAX binding protein

MRGPRF

MAS-related GPR, member F

SH3D19

SH3 domain protein D19

TRIM61

Putative tripartite motif-containing protein 61

C1orf216

chromosome 1 open reading frame 216

C2orf67

chromosome 2 open reading frame 67

OR51Q1

Olfactory receptor, family 51, subfamily Q, member 1

CCDC64B

Coiled-coil domain-containing protein 64B

SLC9A3R2

solute carrier family 9 isoform 3 regulator 2

SPG7

Spastic paraplegia protein 7

WISP2

WNT1 inducible signaling pathway protein 2

SNRPD2

Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2)

ADAM12

ADAM metallopeptidase domain 12 (meltrin alpha)

SMAD2

SMAD family member 2

SMAD3

SMAD family member 3

AURKA

Aurora kinase A

AURKB

Aurora kinase B

AURKC

Aurora kinase C

ACTA1

Actin, alpha 1, skeletal muscle

ALB

Albumin

ALDOA

aldolase A, fructose-bisphosphate

DES

Desmin

LRRTM1

Leucine rich repeat transmembrane neuronal 1

  1. Twenty genes (lane 1 to 20) were randomly selected from the cisRED database. Eleven genes (lane 21 to 31) with known functions were arbitrarily added to complete the random selection and used as internal controls for gene annotation analyses.