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Figure 2 | BMC Bioinformatics

Figure 2

From: Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling

Figure 2

Structural Properties. Schematic diagram of Structural Properties. The shaded sphere with radius r is centered at base i. The nucleotides that lie within the sphere and delineate compartment 1 (nucleotides consecutive to base i before leaving sphere, indicated with a red arc) are counted as the base condensation measure and the nucleotides that lie within the sphere and delineate compartment 2 (nucleotides on sequence that has exited and re-entered sphere, indicated with a blue arc) are counted as the base looping measure. The total number of nucleotides contained within the sphere is counted as the base density measure.

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BMC Bioinformatics

ISSN: 1471-2105

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