w2 | 0 | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 1 |
---|
TC | 39.948 | 42.643 | 45.262 | 47.442 | 48.754 |
49.005
*
|
48.745
| 48.352 | 47.142 | 45.4923 | 43.385 |
- The results show that using secondary structure information (i.e. w2 > 0) always increases the alignment scores over without using it (i.e. w2 = 0). MSACompro yielded the highest accuracy score of ~68.70 when w2 is set to 0.5.