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Table 12 TC scores for different weights of relative solvent accessibility on the SABmark benchmark. Bold denotes the two best scores, and an extra superscript of star denotes the highest score.

From: MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

w3

0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.8

0.9

1

TC

39.948

41.300

43.035

43.943

44.870

45.442 *

45.184

45.031

44.0383

42.4471

41.012

  1. The results show that using relative solvent accessibility information (i.e. w3 > 0) always increases the alignment scores over without using it (i.e. w3 = 0). MSACompro yielded the highest accuracy score of ~68.70 when w2 is set to 0.5.
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BMC Bioinformatics

ISSN: 1471-2105

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