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Table 5 Overall mean SP and TC scores on the OXBENCH. Bold denotes highest scores.

From: MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

MSA tools

Mean SP score

Mean TC score

MSACompro

92.60

84.99

Clustalw

89.45

80.19

DIALIGN-TX

86.25

75.29

FSA

86.47

75.79

MAFFT

87.58

76.75

MSAProbs

90.06

81.40

MUSCLE

89.50

80.34

Opal

89.38

79.77

POA

82.19

68.40

Probalign

89.97

81.39

ProbCons

89.68

80.52

T-coffee

89.56

80.27

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BMC Bioinformatics

ISSN: 1471-2105

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