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Table 6 Total SP scores of the tools which use the structural information on BAliBASE 3.0 subsets, SABmark data sets and OXBENCH data sets.

From: MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts

MSA tools

RV11

RV12

RV20

RV30

RV40

RV50

Whole BAliBASE

SABmark

OXBENCH

MSACompro

73.14

94.84

93.30

87.16

92.11

91.41

88.85

68.85

92.60

MUMMALS

66.94

94.30

91.04

84.79

87.15

87.91

85.53

62.12

90.25

PROMALS

79.08

93.55

93.31

88.30

89.80

90.27

89.00

77.40

93.76

PROMALS3D

83.58

92.33

93.62

89.42

90.93

89.73

90.14

88.89

97.37

  1. Bold denotes the highest scores.
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BMC Bioinformatics

ISSN: 1471-2105

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