W2 | 0 | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 1 |
---|
SP | 60.553 | 62.988 | 65.514 | 67.333 | 68.348 |
68.698
*
|
68.465
| 68.159 | 67.282 | 66.153 | 64.745 |
- The results show that using secondary structure information (i.e. w2 > 0) always increases the alignment scores over without using it (i.e. w2 = 0). MSACompro yielded the highest accuracy score of ~68.70 when w2 is set to 0.5.