BMC Bioinformatics

Table 5 Near-full length sequences

From: Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows

	Skin axillary			Prairie soil
	3%	5%	10%	3%	5%	10%
CROP	1009	1009	1009	1128	1128	1128
ESPRIT	59	43	26	504	340	162
MAFFT+JC	47	39	39	490	346	183
MAFFT+MAFFT	266	126	109	1007	895	714
MAFFT+Mothur	50	39	36	503	351	181
Mothur+JC	47	39	36	491	352	184
Mothur+MAFFT	269	126	109	977	872	689
Mothur+Mothur	54	40	38	535	396	204
Mothur+PreC+ JC	47	39	36	491	353	268
Mothur+PreC+MAFFT	287	127	109	977	877	836
Mothur+PreC+Mothur	55	40	38	536	397	305
MUSCLE+JC	50	39	37	480	337	175
MUSCLE+MAFFT	266	126	109	1007	895	714
MUSCLE+Mothur	58	40	38	487	339	173
Otupipe	49	37	26	490	336	160
RDP	60	43	27	504	348	175

OTUs observed with each of the workflows analysed at distances of 3, 5 and 10% for the skin axillary microbiome data described by Hao et al. [23], and tall grass prairie soil data [37].

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ISSN: 1471-2105

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