Table 2 Performance evaluation on BraliSub
From: PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach
Method | k5 | k7 | k10 | k15 | TIME |
|---|---|---|---|---|---|
| Â | SPS/SCI | SPS/SCI | SPS/SCI | SPS/SCI | Â |
PicXAA-R | 73.90 / 51.39 | 75.06 / 42.37 | 74.02 / 35.75 | 75.43 / 31.29 | 101 |
ProbConsRNA | 70.59 / 34.94 | 70.18 / 28.45 | 68.73 / 24.03 | 66.53 / 18.29 | 35 |
MXSCARNA | 70.77 / 46.30 | 69.93 / 35.95 | 68.58 / 27.91 | 69.75 / 17.79 | 84 |
CentroidAlign | 74.23 / 47.26 | 74.39 / 39.13 | 74.51 / 35.59 | 72.92 / 29.14 | 106 |
MAFFT-xinsi | 78.28 / 57.60 | 78.56 / 52.10 | 78.48 / 44.75 | 79.23 / 38.79 | 261 |