Table 1 Reproducibility of newly detected peaks
| Â | Fold Change | Overlap of Chen Eland (%) | Correlation of Peak Intensity | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Eland | Bowtie | MAQ | Soap2 | Eland | Bowtie | MAQ | Soap2 | Eland | Bowtie | MAQ | Soap2 | Â |
c-Myc | 1.01 | 3.26 | 2.25 | 3.41 | 95.12 | 78.23 | 77.53 | 79.78 | 1.00 | 0.97 | 0.98 | 0.98 |
E2f1 | 1.03 | 1.34 | 1.36 | 1.40 | 85.41 | 74.67 | 74.83 | 75.70 | 1.00 | 0.98 | 0.99 | 0.99 |
Esrrb | 2.88 | 3.12 | 3.29 | 3.93 | 99.10 | 88.62 | 89.01 | 90.22 | 1.00 | 0.82 | 0.83 | 0.83 |
Klf4 | 2.30 | 3.56 | 3.54 | 3.83 | 97.00 | 91.66 | 90.90 | 92.48 | 1.00 | 0.94 | 0.95 | 0.95 |
Nanog | 1.01 | 2.15 | 1.84 | 2.42 | 97.93 | 87.93 | 90.06 | 91.69 | 1.00 | 0.97 | 0.99 | 0.99 |
n-Myc | 1.86 | 3.24 | 3.59 | 3.60 | 95.39 | 84.22 | 85.71 | 86.15 | 1.00 | 0.97 | 0.97 | 0.97 |
Oct4 | 2.39 | 6.21 | 6.72 | 6.78 | 96.89 | 84.26 | 84.53 | 87.58 | 1.00 | 0.97 | 0.98 | 0.98 |
Smad1 | 1.49 | 3.19 | 3.24 | 3.53 | 91.56 | 75.58 | 79.84 | 81.62 | 1.00 | 0.85 | 0.86 | 0.88 |
Sox2 | 1.82 | 4.23 | 4.59 | 4.65 | 98.37 | 90.34 | 90.57 | 92.93 | 1.00 | 0.96 | 0.98 | 0.98 |
Stat3 | 1.60 | 8.49 | 4.80 | 8.33 | 97.09 | 80.99 | 81.70 | 84.64 | 1.00 | 0.97 | 0.98 | 0.98 |
Tcfcp2l1 | 1.04 | 1.73 | 1.54 | 1.85 | 89.05 | 90.80 | 91.13 | 92.73 | 0.99 | 0.98 | 0.99 | 0.99 |
Zfx | 2.62 | 3.81 | 3.94 | 4.06 | 94.89 | 87.67 | 87.61 | 88.42 | 1.00 | 0.96 | 0.97 | 0.97 |