Table 1 Experimental datasets
From: Repeat-aware modeling and correction of short read errors
Dataset | Type | Reference genome | Genome length | Repeats | Repeat Types (length, multiplicity) | C | Number of reads |
|---|---|---|---|---|---|---|---|
D 1 | 1(a) | - | 1M | 20% | (1000, 200) | 80x | 2.2M |
D 2 | 1(a) | - | 1M | 50% | (500, 400), (1500, 200) | 80x | 2.2M |
D 3 | 1(a) | - | 1M | 80% | (500, 400), (1500, 200) | 80x | 2.2M |
(3000, 100) | |||||||
D 4 | 1(b) | N. meningitidis | 2.1M | - | - | 80x | 4.8M |
D 5 | 1(b) | Maize | 418K | - | - | 80x | 0.92M |
D 6 | 2 | E. coli | 4.6M | - | - | 160x | 20.7M |