Table 2 Technologies used in the SDDM process.

ActiveMQ

http://activemq.apache.org/

Used to connect each of the following BioSITES software components: Detectors, Sensors, Routers, and Controllers.

Rexter

https://github.com/tinkerpop/rexster/wiki/

Rexter exposes RDF over REST.

JAXB

http://jaxb.java.net/

Parses the contents of the XML-metadata into java objects, place the content of these objects into a message, contact the broker, and forward a message to downstream routers.

Neo4J

http://neo4j.org/download/

Used to import the ProMED mail archive for easy searching.

OrientDB

http://www.orientechnologies.com/orient-db.htm

A NoSQL DBMS which can store 150000 documents per second on common hardware

DEX

http://www.sparsity-technologies.com/dex.php

A high-performance graph database written in Java and C++ that allows the integration of multiple data sources

Jena’s TDB

http://www.openjena.org/TDB/

TDB is a component of Jena. It provides for large scale storage and query of RDF datasets using a pure Java engine

Jena

http://www.openjena.org/

An API for the manipulation of RDF data.

Sesame

http://www.openrdf.org/

An API for the manipulation of RDF

AllegroGraph

http://clos.org/agraph/downloads/

A system to load, store and query RDF data.

Virtuoso

http://virtuoso.openlinksw.com/dataspace/dav/wiki/Main/VOSDownload

Virtuoso is an innovative enterprise grade multi-model data server for agile enterprises & individuals.

Gremlin

https://github.com/tinkerpop/gremlin/wiki

Gremlin is a graph traversal language

Protege

http://protege.stanford.edu/

A free open-source Java tool providing an extensible architecture for the creation of customized knowledge-based applications

Tomcat

http://tomcat.apache.org/

Apache Tomcat is an open source software implementation of the Java Servlet and JavaServer Pages technologies.

SPARQL

http://www.w3.org/TR/rdf-sparql-query/

A relational like query interface to SQL Data