Table 2 Characteristics of SNP networks in different thresholds of T1D study.
From: SNP and gene networks construction and analysis from classification of copy number variations data
PLINK thresholds | NO. of networks | NO. of SNPs | NO. of SNP pairs |
|---|---|---|---|
0.1 | 2 | 1(2), 2(49) | 1(1), 2(60) |
0.05 | 4 | 1(3), 2(4), 3(9), 4(20) | 1(2), 2(3), 3(8), 4(21) |
0.01 | 5 | 1(2), 2(2), 3(2), 4(2), 5(5) | 1(1), 2(1), 3(1), 4(1), 5(4) |
0.005 | 3 | 1(2), 2(2), 3(5) | 1(1), 2(1), 3(4) |
0.001 | 1 | 1(2) | 1(1) |