From: SNP and gene networks construction and analysis from classification of copy number variations data
PLINK thresholds | NO. of networks | Selected mean | Random | Significance value | |
---|---|---|---|---|---|
 |  |  | mean | variance |  |
0.1 | 2 | 1(0.0985) | 1(0.5648) | 1(0.0991) | 1.2672 × 10–6 |
 |  | 2(0.0450) | 2(0.5645) | 2(0.1008) | 1.2765 × 10–7 |
0.05 | 4 | 1(0.0298) | 1(0.5805) | 1(0.1018) | 3.1578 × 10–8 |
 |  | 2(0.0225) | 2(0.5682) | 2(0.0995) | 2.0741 × 10–8 |
 |  | 3(0.0306) | 3(0.5638) | 3(0.1005) | 5.6191 × 10–8 |
 |  | 4(0.0203) | 4(0.5633) | 4(0.1002) | 2.9939 × 10–8 |
0.01 | 5 | 1(0.0054) | 1(0.5862) | 1(0.1003) | 3.5062 × 10–9 |
 |  | 2(0.0057) | 2(0.5645) | 2(0.0983) | 6.5545 × 10–9 |
 |  | 3(0.0012) | 3(0.5622) | 3(0.0971) | 3.7898 × 10–9 |
 |  | 4(0.0011) | 4(0.5545) | 4(0.1009) | 2.0716 × 10–8 |
 |  | 5(0.0015) | 5(0.5528) | 5(0.1004) | 1.9979 × 10–8 |
0.005 | 3 | 1(0.0011) | 1(0.5327) | 1(0.1024) | 1.0436 × 10–7 |
 |  | 2(0.0012) | 2(0.5300) | 2(0.0998) | 5.8348 × 10–8 |
 |  | 3(0.0015) | 3(0.5762) | 3(0.1004) | 5.1991 × 10–9 |
0.001 | 1 | 1(0.0001) | 1(0.5578) | 1(0.0950) | 2.1721 × 10–9 |