Table 4 Detailed gene descriptions of SNPs selected in chromosome 6 of T1D study.
From: SNP and gene networks construction and analysis from classification of copy number variations data
SNP ID | Gene Symbol | Gene ID | Description |
|---|---|---|---|
rs6940177 | TRDN | 10345 | triadin |
rs17209874 | RUNX2 | 860 | runt-related transcription factor 2 |
rs9479373 | LOC646024 | 646024 | locus-region |
rs3778077 | NUDT3 | 11165 | nudix (nucleoside diphosphate linked moiety X)-type motif 3 |
rs16875181 | GPR116 | 221395 | G protein-coupled receptor 116 |
rs7754428 | GMDS | 2762 | GDP-mannose 4,6-dehydratase |
rs6902158 | LRRC16 | 55604 | leucine rich repeat containing 16 |
rs6912853 | BTN3A1 | 11119 | butyrophilin, subfamily 3, member A1 |
rs991974 | LMBRD1 | 55788 | chromosome 6 open reading frame 209 |
rs643394 | LOC442256 | 442256 | similar to PPP1R14B protein |
rs9397339 | PLEKHG1 | 57480 | pleckstrin homology domain containing, family G (with RhoGef domain) member 1 |
rs319123 | C6orf210 | 57107 | chromosome 6 open reading frame 210 |
rs352095 | FLJ34503 | 285759 | hypothetical protein FLJ34503 |
rs1738262 | DNAH8 | 1769 | dynein, axonemal, heavy polypeptide 8 |
rs7760230 | SNX9 | 51429 | sorting nexin 9 |
rs10947885 | LRFN2 | 57497 | leucine rich repeat and fibronectin type III domain containing 2 |
rs1334689 | EPB41L2 | 2037 | erythrocyte membrane protein band 4.1-like 2 |
rs1406882 | FYN | 2534 | FYN oncogene related to SRC, FGR, YES |
rs1563666 | LOC643281 | 643281 | intron |
rs9321142 | LAMA2 | 3908 | laminin, alpha 2 (merosin, congenital muscular dystrophy) |
rs2073012 | NOX3 | 50508 | NADPH oxidase 3 |
rs11154452 | LAMA2 | 3908 | laminin, alpha 2 (merosin, congenital muscular dystrophy) |
rs9394755 | UNC5CL | 222643 | unc-5 homolog C (C. elegans)-like |
rs9371491 | MTHFD1L | 25902 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like an enzyme involved in THF synthesis in mitochondria |
rs6918886 | RPS6KA2 | 6196 | ribosomal protein S6 kinase, 90kDa, polypeptide 2 |