Table 13 The Docking Results of DoBi, ZDOCK and 3D-Dock on CAPRI
From: Protein-protein binding site identification by enumerating the configurations
Target | DoBi1000 | ZDOCK | DoBi10 | 3D-Docke | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
iRMSDa | NCb | F l c | F r d | iRMSD | NC | F l | F r | iRMSD | NC | F l | F r | iRMSD | NC | |
T1 | 4.28 | 27.6 | 56.0 | 45.2 | 8.10 | 17.2 | 50.0 | 32.0 | 5.45 | 44.0 | 74.1 | 64.3 | 3.0 | 46 |
T2 | 6.23 | 76.9 | 38.8 | 35.3 | 4.15 | 46.2 | 51.9 | 35.7 | 8.27 | 53.8 | 48.0 | 36.4 | — | — |
T3 | 18.48 | 9.4 | 17.1 | 43.9 | 3.89 | 62.5 | 64.0 | 60.6 | 18.51 | 12.0 | 22.9 | 51.4 | — | — |
T4 | 3.98 | 63.5 | 66.6 | 57.1 | 4.50 | 23.1 | 78.2 | 58.3 | 6.24 | 35.9 | 38.3 | 51.6 | 15.1 | 21 |
T5 | 11.06 | 7.7 | 46.8 | 31.6 | 10.08 | 5.4 | 76.6 | 18.9 | 11.06 | 7.7 | 46.8 | 31.6 | — | — |
T6 | 16.49 | 15.4 | 36.4 | 33.4 | 8.72 | 29.2 | 54.2 | 71.6 | 19.21 | 9.6 | 18.2 | 28.1 | 0.8 | 86 |
T7 | 11.10 | 13.5 | 62.8 | 24.0 | 6.43 | 2.7 | 44.4 | 4.8 | 11.10 | 13.5 | 62.8 | 24.0 | 28.6 | 14 |
T8 | 6.69 | 37.9 | 42.7 | 60.9 | 2.73 | 63.6 | 82.8 | 60.0 | 6.69 | 37.9 | 42.7 | 60.9 | 1.7 | 33 |
T9 | 2.85 | 33.3 | 61.3 | 67.6 | 8.46 | 28.9 | 54.1 | 58.7 | 10.54 | 1.4 | 36.7 | 37.7 | 9.7 | 23 |
T10 | 4.52 | 28.9 | 50.4 | 51.8 | 14.75 | 5.9 | 15.4 | 17.3 | 7.69 | 13.0 | 58.1 | 59.3 | 34.8 | 0 |
T11 | 2.55 | 66.7 | 68.5 | 75.0 | 2.63 | 61.1 | 96.0 | 82.1 | 12.17 | 0 | 0 | 45.0 | 1.9 | 20 |
T12 | 2.55 | 66.7 | 68.5 | 75.0 | 2.31 | 81.5 | 75.9 | 88.9 | 12.17 | 0 | 0 | 45.0 | 3.2 | 22 |
T13 | 3.33 | 94.1 | 74.1 | 69.6 | 2.49 | 57.1 | 52.9 | 59.3 | 3.33 | 94.1 | 74.1 | 69.6 | 6.4 | 6 |
T14 | 19.98 | 9.6 | 34.5 | 28.0 | 5.22 | 42.0 | 72.7 | 68.9 | 20.97 | 10.3 | 36.1 | 28.3 | 0.9 | 47 |
T15 | 2.40 | 53.6 | 86.9 | 83.0 | 0.86 | 91.1 | 90.6 | 81.8 | 4.00 | 42.0 | 64.2 | 63.6 | — | — |
T18 | 8.08 | 25.0 | 57.7 | 44.4 | 1.88 | 66.2 | 80.0 | 80.0 | 11.38 | 8.2 | 10.3 | 19.7 | 9.4 | 14 |
T19 | 2.74 | 58.8 | 60.0 | 69.0 | 9.81 | 4.8 | 40.0 | 14.6 | 2.74 | 58.8 | 60.0 | 69.0 | 3.9 | 31 |
T20 | 15.13 | 1.1 | 14.7 | 28.6 | 13.62 | 7.2 | 35.0 | 37.1 | 15.13 | 1.1 | 14.7 | 28.6 | — | — |
T21 | 2.02 | 50.0 | 77.8 | 68.8 | 2.43 | 70.7 | 83.3 | 70.6 | 2.02 | 50.0 | 77.8 | 68.8 | — | — |
T22 | 16.08 | 7.5 | 20.0 | 71.4 | 9.28 | 12.6 | 66.7 | 0 | 16.08 | 7.5 | 20.0 | 71.4 | — | — |
T23 | 1.90 | 61.2 | 86.9 | 88.4 | 2.14 | 72.1 | 87.3 | 87.9 | 3.14 | 46.0 | 83.1 | 83.1 | — | — |
T24 | 5.01 | 50.0 | 31.6 | 20.0 | 28.15 | 0 | 0 | 0 | 5.01 | 50.0 | 31.6 | 20.0 | — | — |
T26 | 7.11 | 29.6 | 26.1 | 45.2 | 30.07 | 0 | 0 | 0 | 7.11 | 29.6 | 26.1 | 45.2 | — | — |
T27 | 6.95 | 60.0 | 42.4 | 51.9 | 15.89 | 3.5 | 24.4 | 0 | 7.38 | 66.7 | 38.5 | 50.0 | — | — |
T29 | 2.46 | 68.6 | 83.3 | 79.3 | 3.90 | 58.6 | 77.4 | 72.1 | 3.80 | 32.7 | 69.4 | 77.8 | — | — |