Table 2 Pore-lining residue, pore-lining helix, topology and pore stoichiometry results for all targets
From: Detecting pore-lining regions in transmembrane protein sequences
Target | Per-residue MCC | Pore-lining helices | Topology | Pore stoichiometry | |||
|---|---|---|---|---|---|---|---|
Observed | Predicted | Correct | Over/Under | Observed | Predicted | ||
1E12_A | 0.04 | 4 | 2 | 1 | 0 | 1 | 1 |
1FFT_A | 0.28 | 3 | 3 | 0 | 3 | 1 | 1 |
1KQG_B | −0.42 | 1 | 0 | 0 | 0 | 6 | 6 |
1KQG_C | 0.03 | 2 | 0 | 1 | 0 | 6 | 5 |
1L7V_B | 0.63 | 2 | 2 | 0 | 1 | 2 | 1 |
1LDI_A | 0.41 | 5 | 2 | 1 | 0 | 1 | 3 |
1LNQ_A | 0.76 | 1 | 0 | 1 | 0 | 4 | 4 |
1P7B_A | 0.52 | 1 | 1 | 1 | 0 | 4 | 4 |
1PW4_A | 0.50 | 7 | 3 | 1 | 0 | 1 | 1 |
1R3J_C | 0.54 | 1 | 0 | 1 | 0 | 4 | 6 |
1T9Y_A | 0.31 | 6 | 2 | 0 | −4 | 1 | 1 |
1XL6_A | 0.51 | 1 | 1 | 1 | 0 | 4 | 4 |
1XME_A | 0.27 | 3 | 3 | 1 | 0 | 1 | 1 |
1XQF_A | 0.52 | 5 | 4 | 0 | −1 | 1 | 1 |
1Z98_A | 0.35 | 3 | 3 | 1 | 0 | 1 | 1 |
1ZLL_E | 0.00 | 1 | 0 | 0 | 0 | 5 | 3 |
2AHY_A | 0.52 | 1 | 0 | 1 | 0 | 4 | 5 |
2B2F_A | 0.49 | 4 | 3 | 0 | −2 | 1 | 1 |
2BG9_A | 0.15 | 1 | 1 | 1 | 0 | 5 | 2 |
2BG9_E | 0.37 | 1 | 1 | 1 | 0 | 5 | 2 |
2C3E_A | −0.10 | 6 | 3 | 0 | −2 | 1 | 1 |
2C8L_A | 0.37 | 4 | 3 | 1 | 0 | 1 | 1 |
2D57_A | 0.28 | 4 | 3 | 1 | 0 | 1 | 1 |
2F2B_A | 0.05 | 3 | 1 | 1 | 0 | 1 | 3 |
2GFP_A | 0.24 | 6 | 2 | 1 | 0 | 1 | 1 |
2HYD_A | 0.22 | 4 | 1 | 0 | −1 | 2 | 2 |
2OAR_A | 0.00 | 1 | 1 | 1 | 0 | 5 | 3 |
2OAU_A | 0.11 | 1 | 0 | 1 | 0 | 7 | 4 |
2ONK_C | 0.49 | 3 | 1 | 1 | 0 | 2 | 2 |
2QFI_A | 0.26 | 2 | 1 | 1 | 0 | 2 | 3 |
2QKS_A | 0.44 | 1 | 1 | 1 | 0 | 4 | 4 |
2QTS_A | 0.50 | 1 | 1 | 1 | 0 | 3 | 5 |
2R6G_F | 0.33 | 2 | 1 | 1 | 0 | 2 | 2 |
2R6G_G | 0.07 | 3 | 1 | 1 | 0 | 2 | 1 |
2RDD_B | −0.61 | 1 | 0 | 0 | 0 | 3 | 5 |
2W2E_A | 0.38 | 4 | 3 | 1 | 0 | 1 | 1 |
2ZW3_A | −0.36 | 1 | 0 | 1 | 0 | 6 | 3 |
3B8C_A | 0.45 | 5 | 3 | 1 | 0 | 1 | 1 |
3B9W_A | 0.46 | 5 | 4 | 1 | 0 | 1 | 1 |
3BEH_A | 0.22 | 1 | 0 | 0 | −1 | 4 | 2 |
3C02_A | 0.37 | 4 | 4 | 1 | 0 | 1 | 1 |
3DDL_A | 0.11 | 4 | 2 | 1 | 0 | 1 | 1 |
3DHW_A | 0.20 | 2 | 1 | 1 | 0 | 2 | 2 |
3EAM_A | 0.30 | 1 | 0 | 0 | −1 | 5 | 3 |
3GIA_A | 0.32 | 4 | 3 | 1 | 0 | 1 | 1 |
3H9V_A | 0.13 | 2 | 1 | 1 | 0 | 3 | 4 |
3HD6_A | 0.50 | 4 | 4 | 1 | 0 | 1 | 1 |
3K3F_A | 0.44 | 4 | 2 | 1 | 0 | 1 | 1 |
3KG2_A | 0.37 | 1 | 1 | 0 | 1 | 4 | 1 |
3MKT_A | 0.32 | 5 | 4 | 1 | 0 | 1 | 1 |
3O0R_B | 0.11 | 5 | 0 | 1 | 0 | 1 | 1 |
3P5N_A | 0.10 | 4 | 3 | 1 | 0 | 1 | 1 |