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Table 3 Encode project mRNA-seq data: per-read error rate estimates

From: Estimation of sequencing error rates in short reads

Sample

sr estimate

sr standard error

mm estimate

SRR002053

0.46

0.0065

0.63

SRR002056

0.33

0.0032

0.45

SRR002065

0.40

0.0041

0.55

SRR005092

0.52

0.0073

0.73

SRR005093

0.43

0.0046

0.56

  1. Shadow regression is abbreviated “sr”. Mismatch-counting is abbreviated “mm”.
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BMC Bioinformatics

ISSN: 1471-2105

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