Figure 4

Benchmarking on simulated Escherichia coli data sets. Performance of MCOA, MGSA, GenGO, weight, parent-child union and hypergeometric methods on simulated Escherichia coli data sets created with false positive rate (q) of 0.1, false negative rate (1-p) of 0.25. (A) Precision/recall statistics are computed using all categories. (B) Precision/recall statistics are computed using only significantly enriched categories.