Table 1 Comparison of automatic reannotations of the Saccharomyces cerevisiae genome by YGAP and AUGUSTUS, to the reference annotation
From: A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach
Chromosome | Same Coordinates | False Negatives | Overlap | False Positives | Wrong Start or Stop coordinate | |||||
|---|---|---|---|---|---|---|---|---|---|---|
YGAP | AUGUSTUS | YGAP | AUGUSTUS | YGAP | AUGUSTUS | YGAP | AUGUSTUS | YGAP | AUGUSTUS | |
Chr_1 | 75 | 76 | 7 | 5 | 1 | 1 | 2 | 3 | 8 | 9 |
Chr_2 | 354 | 346 | 3 | 13 | 2 | 2 | 5 | 6 | 28 | 26 |
Chr_3 | 135 | 126 | 1 | 9 | 6 | 0 | 6 | 4 | 9 | 16 |
Chr_4 | 668 | 646 | 8 | 24 | 2 | 1 | 15 | 16 | 47 | 54 |
Chr_5 | 236 | 232 | 1 | 6 | 7 | 0 | 6 | 10 | 18 | 24 |
Chr_6 | 101 | 106 | 2 | 8 | 1 | 1 | 8 | 5 | 14 | 3 |
Chr_7 | 457 | 446 | 1 | 9 | 6 | 1 | 7 | 14 | 37 | 45 |
Chr_8 | 237 | 235 | 2 | 7 | 2 | 1 | 9 | 8 | 22 | 20 |
Chr_9 | 180 | 176 | 0 | 7 | 5 | 1 | 4 | 4 | 20 | 21 |
Chr_10 | 312 | 300 | 0 | 9 | 4 | 0 | 6 | 5 | 25 | 32 |
Chr_11 | 284 | 275 | 1 | 9 | 5 | 0 | 1 | 0 | 18 | 24 |
Chr_12 | 445 | 414 | 3 | 14 | 5 | 2 | 10 | 10 | 24 | 48 |
Chr_13 | 405 | 387 | 2 | 10 | 7 | 0 | 5 | 9 | 22 | 39 |
Chr_14 | 353 | 337 | 0 | 11 | 4 | 3 | 3 | 4 | 25 | 31 |
Chr_15 | 465 | 451 | 3 | 14 | 4 | 0 | 5 | 12 | 34 | 42 |
Chr_16 | 412 | 385 | 10 | 17 | 4 | 0 | 7 | 7 | 25 | 49 |
Total | 5119 | 4938 | 44 | 172 | 65 | 13 | 99 | 117 | 376 | 483 |