Coral: an integrated suite of visualizations for comparing clusterings

BMC Bioinformatics

Table 1 Clustering algorithms used on A. thaliana network

Algorithm	Proteins	Modules	Enriched
Louvain[9]	2369	23	21
CFinder[8]	508	666	180
Clauset[7]	2313	20	18
MCL[5]	844	46	33
MCODE[6]	268	20	16
MCODE.F[6]	1314	20	19
MINE[12]	206	57	29
SPICi[11]	259	46	27

Statistics on clusterings of the largest connected component of the A. thaliana network. All algorithms were run using their default settings. MCODE was run without “haircut” and no “fluff,” MCODE.F included “fluff.” The table reports the number of proteins that were assigned to at least one module, the number of modules after filtering according to procedure used in Vidal et al.[31], and the number of modules FuncAssoc[41] reported as enriched for at least one GO annotation.

ISSN: 1471-2105