Table 4 List of 32 amino acid properties used in the analysis
From: Bayesian semiparametric regression models to characterize molecular evolution
AAindex accession number (if available) | Property | Symbol | AAindex accession number (if available) | Property | Symbol |
|---|---|---|---|---|---|
KYTJ820101 | Hydropathy | h | ∗ | Helical contact area | C a |
GRAR740103 | Molecular volume | M v | ZIMJ680104 | Isoelectric point | p H i |
MANP780101 | Surrounding hydrophobicity | H p | OOBM770103 | Long-range non-bonded energy | E l |
ZIMJ680103 | Polarity(Zimmerman) | p zim | ∗ | Mean r.m.s. fluctuation displacement | F |
CHOP780201 | Alpha-helical tendencies | P α | FASG760101 | Molecular weight | M w |
GRAR740102 | Polarity(Grantham) | p | ∗ | Normalized consensus hydrophobicity | H nc |
PONP800108 | Average number of surrounding residues | N s | COHE430101 | Partial specific volume | V 0 |
∗ | Power to be at the C-terminal | α c | WOEC730101 | Polar requirement | P r |
GRAR740101 | Composition | c | ∗ | Power to be at the middle of alpha-helix | α m |
∗ | Compressibility | K 0 | ∗ | Power to be at the N-terminal | α n |
FAUJ880113 | Equilibrium constant (ionization of COOH) | p K ′ | MCMT640101 | Refractive index | μ |
CHOP780202 | Beta-structure tendencies | P β | OOBM770102 | Short and medium range non-bonded energy | E sm |
ZIMJ680102 | Bulkiness | B l | PONP800107 | Solvent accessible reduction ratio | R a |
∗ | Buriedness | B r | ∗ | Thermodynamic transfer hydrophobicity | H t |
∗ | Chromatographic index | R F | OOBM770101 | Total non-bonded energy | E t |
CHAM830101 | Coil tendencies | P c | CHOP780101 | Turn tendencies | P |