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Table 1 Simulation parameters

From: The tree alignment problem

Parameter

Values Evaluated

Substitution Rate

1.5

Average Branch Length

0.05,0.1,0.2,0.3,∞

Max. Gap

1,2,5,10,15

Root Sequence Length

70,100,150,200,

300,400,500,1000

  1. All combinations of parameters were employed to generate the test data sets. The branch length variation equals the average branch length.
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BMC Bioinformatics

ISSN: 1471-2105

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