Table 4 ArrayExpress experiments summary and penalized uniqueness score comparison
From: Flexible and efficient genome tiling design with penalized uniqueness score
E-GEOD-ID | Array no. | Factor level | Filtered probe no. | Filtered probe mean/median | Filtered probe std. dev. | Normal probe mean/median | t-test p-value |
|---|---|---|---|---|---|---|---|
 22072 | 5 | 2 | 18 | 9.306/8.798 | 3.235 | 9.131/10.04 | NA |
 23131 | 31 | 3 | 61 | 8.735/9.796 | 3.492 | 9.132/10.04 | NA |
 23558 | 32 | 2 | 136 | 4.784/3.503 | 4.246 | 9.146/10.05 | 2.2E-16 |
 23697 | 70 | 2 | 1 | 0/0 | NA | 9.131/10.04 | NA |
 24536 | 52 | 5 | 11 | 7.508/9.957 | 4.973 | 9.132/10.04 | NA |
 25623 | 32 | 3 | 1 | 4.655/4.655 | NA | 9.131/10.04 | NA |
 27915 | 20 | 5 | 6 | 9.633/9.899 | 2.824 | 9.131/10.04 | NA |
 29288 | 132 | 9 | 9 | 8.641/9.957 | 3.965 | 9.131/10.04 | NA |
 32155 | 21 | 7 | 23 | 8.48/9.613 | 3.642 | 9.132/10.04 | NA |
 32988 | 48 | 10 | 145 | 6.618/8.636 | 4.383 | 9.14/10.04 | 1.34E-10 |
 33264 | 49 | 16 | 31 | 9.428/9.957 | 2.76 | 9.131/10.04 | NA |
 35635 | 57 | 3 | 1 | 12.79/12.79 | NA | 9.131/10.04 | NA |
 35756 | 32 | 8 | 458 | 4.229/3.396 | 3.876 | 9.187/10.04 | 2.2E-16 |
 37827 | 87 | 29 | 32 | 9.078/9.701 | 2.837 | 9.131/10.04 | NA |