Figure 4

The prediction accuracy of the naive post-filtering method. The percentage of the cases among the tested complexes is shown where the naive post-filtering method obtained a near native structure of below A, 2.5 Å iRMSD; B, 4.0 Å iRMSD; within specified ranks at the x-axis. PPI site information of five different accuracy levels are used: correct PPI (pentagons); 5 residue shifted (downward triangles); 10 residue-shifted (upward triangles), 12 residue-shifted (diamonds); and 15 residue-shifted PPI regions (squares). For comparison, results of the base LZerD which do not use PPI information are also shown (filled triangles).