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Table 10 Results of downstream analysis

From: Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

 

Chin

TCGA I

TCGA II

 

(157)

(17352)

(31947)

distance matching

   

individual

4009

929

9845

intersection

66

913

9768

distanceAny matching (< 10000 bp)

   

individual

74

914

9772

intersection

66

932

9769

distanceAny matching (< 100000 bp)

   

individual

787

937

9814

intersection

66

924

9740

overlap matching

   

individual

675

912

9824

intersection

66

911

9801

overlapAny matching (> 0%)

   

individual

684

937

9810

intersection

67

935

9779

overlapAny matching (> 0.10%)

   

individual

640

937

9809

intersection

67

935

9778

overlapPlus matching

   

individual

737

920

9859

intersection

66

909

9800

  1. Number of genes with a significant cis-effect at FDR < 0.05 for the data set-matching combinations. The number of genes is displayed for data sets as yielded by each matching procedure individually, and for the data sets confined to the set of intersecting genes. The total number of intersecting genes is given directly below to the data set name.
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BMC Bioinformatics

ISSN: 1471-2105

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