Table 4 Ranking of all combinations of methods
Rank | Methods | Avg Subrank | ||
|---|---|---|---|---|
Sets | Rank. algo | Aggrgt | ||
1 | 1:10 | Global | None | 15.3 |
2 | 1:10 | Global | SetSig | 15.7 |
3 | 1 | Global | None | 16.3 |
4 | 1:10 | GSEA | None | 16.7 |
5 | baseline (all genes used) | 16.8 | ||
6 | 1:10 | Global | SVD | 17.0 |
7 | 1:10 | SAM-GS | None | 17.2 |
8 | 1:10 | SAM-GS | SetSig | 17.6 |
9 | 1:10 | Global | AVG | 18.6 |
10 | 1 | Global | SVD | 19.4 |
11 | 1:10 | GSEA | SetSig | 19.9 |
12 | 1:10 | GSEA | SVD | 20.1 |
13 | 1:10 | SAM-GS | SVD | 20.8 |
14 | 1:10 | GSEA | AVG | 22.1 |
15 | 1 | Global | SetSig | 22.2 |
16 | 1 | SAM-GS | None | 23.0 |
17 | 1 | SAM-GS | SetSig | 23.8 |
18 | 1 | GSEA | None | 23.9 |
19 | 1 | Global | AVG | 24.6 |
20 | 1:10 | SAM-GS | AVG | 25.5 |
21 | 1 | GSEA | SVD | 26.7 |
22 | 1 | GSEA | SetSig | 26.8 |
23 | 1 | SAM-GS | SVD | 28.3 |
24 | 1 | SAM-GS | AVG | 30.3 |
25 | 1 | GSEA | AVG | 30.9 |