Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213

BMC Bioinformatics

Table 4 Putative sRNA identified in identified in M. haemolytica PHL213 using the Rfam database

sRNA_ID	Start	End	strand	rfam-id	rfam accession	G+C content
MHS45	698093	698190	-	Bacteria_small_SRP	RF00169	49
MHS46	902602	902713	-	MOCO_RNA_motif	RF01055	33
MHS47	2002337	2002433	+	TPP	RF00059	51
MHS48	2339489	2339566	-	Alpha_RBS	RF00140	32
MHS49	2687066	2687209	-	GcvB	RF00022	34

EIRs that do not have either a BLASTX hits or predicted promoter or rho-independent terminator, but with matches in Rfam database. sRNA locus, strand specificity and description based on Rfam.

ISSN: 1471-2105