Table 7 Comparisons between searches with different portions of unidentifiable spectra
Search# | Spectra | Database | PMTol | # spec | EmpiricalFDR fixed | FactFDR fixed | |||
|---|---|---|---|---|---|---|---|---|---|
N target | FactFDR(%) | p-value(%) | N target | EmpiricalFDR(%) | |||||
I-1 | ISB-02 | ISB | 2.5 Da | 4,966 | 2329/1009 | 5.8/4.4 | 10.9/30.9 | 2279/1024 | 3.9/5.7 |
I-14 | ISB-02+AB-TC | ISB | 2.5 Da | 11,285 | 2262/984 | 5.8/4.5 | 5.7/34.5 | 2221/995 | 4.0/6.0 |
I-3 | ISB-02 | ISB+Yeast | 2.5 Da | 4,966 | 1578/602 | 4.7/5.1 | 40.8/50.3 | 1583/596 | 5.1/3.9 |
I-5 | ISB-02+AB-TC | ISB+Yeast | 2.5 Da | 11,285 | 1490/569 | 5.0/5.8 | 50.2/31.2 | 1480/553 | 4.5/4.3 |
I-15 | ISB-02+AB-All | ISB+Yeast | 2.5 Da | 24,948 | 1367/531 | 4.2/5.3 | 33.0/34.5 | 1393/518 | 5.5/4.2 |
Y-1 | Y-Small+AB-TC | Yeast+AT | 30 ppm | 16,077 | 2574/1988 | 1.0/1.3 | 50.1/22.7 | 2588/1759 | 1.0/0.5 |
Y-6 | Y-Small+AB-All | Yeast+AT | 30 ppm | 29,740 | 2238/1913 | 1.1/1.4 | 44.2/14.7 | 2208/1629 | 0.9/0.7 |