Table 1 Comparing average number of pathways crossed from the top 20 routes in two methods.
From: CMPF: Class-switching minimized pathfinding in metabolic networks
Source | Target | switch mrsd | switch neato | switch metaroute | switchcmpf 1 | switchcmpf 2 |
|---|---|---|---|---|---|---|
glucose | pyruvate | 1.95 | 1.5 | 2.95 | 0 | 0.85 |
glutamate | proline | 2.45 | 2.79 | 0.47 | 0 | 0.3 |
oxaloacetate | malate | 1.75 | 1.33 | 0.65 | 0 | 0.95 |
glutamate | arginine | 2.45 | 2.05 | 0.4 | 0 | 0 |
cdp-diacyl-glycerol | cardiolipin | 1.75 | 1.0 | 1.8 | 0 | 0.1 |
gtp | riboflavin | 2 | 1.78 | 4.25 | 0.95 | 1.05 |
allantoin | glyoxylate | 4.3 | 2.0 | * | 1.85 | 3.15 |
rhamnose | pyruvate | 1.9 | 0.875 | 1.1 | 0.85 | 1 |