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Table 1 Benchmark results

From: Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

 

SENSITIVITY

SPECIFICITY

PPV

MCC

TRAINING SET

0.269

0.984

0.461

0.312

HOLO TEST SET

0.295

0.983

0.413

0.313

APO TEST SET

0.251

0.984

0.372

0.271

  1. Results obtained by PDBinder on the Training Set and Apo/Holo Test Sets. These results were derived by using a single propensity threshold for all the amino acids and applying the spatial clustering with a 10 Angstrom threshold.
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BMC Bioinformatics

ISSN: 1471-2105

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