Figure 7
From: Maximum expected accuracy structural neighbors of an RNA secondary structure
Figure depicting the increasing divergence between RNAbor and RNAborMEA. For each RNA sequence in the seed alignment from Rfam family RF00066 of U7 small nuclear RNAs, both RNAbor and RNAborMEA were run, in order to compute the MFE(k) structure and the MEA(k) structure, which have minimum free energy resp. maximum expected accuracy among all k-neighbors of the intial minimum free energy structures S0. We computed the base pair distance between the MFE(k) structure and the MEA(k) structure over all sequences in the seed alignment of RF00066. The figure displays the average ± one standard deviation of base pair distance.