From: A context-based approach to identify the most likely mapping for RNA-seq experiments
Data set | Program | Complete Read Mapping | Junction Read Mapping | ||
---|---|---|---|---|---|
 |  | exact | relaxed | exact | relaxed |
Human, 1% | TopHat | 93.85 | 93.85 | 72.18 | 80.73 |
 | ContextMap1 | 95.76 | 95.76 | 73.12 | 86.21 |
 | MapSplice | 78.81 | 89.64 | 70.16 | 78.78 |
 | ContextMap2 | 95.97 | 95.98 | 73.07 | 86.05 |
Human, 2% | TopHat | 90.30 | 90.30 | 70.38 | 78.05 |
 | ContextMap1 | 95.51 | 95.52 | 71.53 | 83.78 |
 | MapSplice | 53.92 | 81.45 | 58.73 | 68.14 |
 | ContextMap2 | 95.45 | 95.48 | 64.13 | 78.68 |