From: Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs
Species | Database | Original PPI | Predicted PPI | Percentage (%) |
---|---|---|---|---|
By machine learning | Â | Â | Â | Â |
E. coli | ECID | 14,058(positive)+ 27,882(negative) | 12,899 | 27.97 |
By interolog | Â | Â | Â | Â |
Escherichia coli | IntAct | 14,158 | 16,468 | 35.71 |
Campylobacter jejuni | IntAct | 11,870 | 7,674 | 16.64 |
Treponema pallidum | IntAct | 3,744 | 324 | 0.70 |
Synechocystis | IntAct | 2,625 | 2,481 | 5.38 |
Myxococcus xanthus | IntAct | 384 | 253 | 0.55 |
Synechocystis sp. | IntAct | 219 | 220 | 0.48 |
Rickettsia sibirica | IntAct | 282 | 24 | 0.05 |
Streptococcus pneumoniae | IntAct | 193 | 47 | 0.10 |
Drosophila melanogaster | DIP | 22,650 | 1,558 | 3.38 |
Saccharomyces cerevisiae | DIP | 21,769 | 2,701 | 5.86 |
Caenorhabditis elegans | DIP | 3,979 | 229 | 0.50 |
Homo sapiens | DIP | 1,485 | 84 | 0.18 |
Mus musculus | DIP | 287 | 36 | 0.06 |
Rattus norvegicus | DIP | 69 | 2 | 0.15 |
Total: 46,119 interactions in 3,465 proteins (with 530 known PPIs) |