Figure 3From: RuleBender: integrated modeling, simulation and visualization for rule-based intracellular biochemistryCompartmental Contact Map. Contact Map with molecule compartment hierarchy (extracellular, cytoplasmic, nucleus etc). The saturation of the convex hull encompassing a compartment indicates the hierarchical structure of the compartments; the outermost compartment is colored the lightest blue. All the members of a compartment can be moved as a whole unit to get a clear view of the hierarchical structure.Back to article page