Skip to main content

Table 4 Species-wise and overall comparisons between LASAGNA and MEME

From: LASAGNA: A novel algorithm for transcription factor binding site alignment

Species

# better1

# ties2

# TFs3

p-value4

H. sapiens

41 (60.3%)

0

68

7.83×10−3

M. musculus

41 (77.4%)

0

53

8.79×10−6

D. melanogaster

26 (89.7%)

0

29

1.02×10−7

S. cerevisiae

10 (76.9%)

3

13

2.96×10−3

R. norvegicus

23 (88.5%)

1

26

1.73×10−4

Overall

141 (74.6%)

4

189

3.55×10−15

  1. 1. Number of TFs on which LASAGNA performs better than MEME.
  2. 2. Number of TFs on which LASAGNA and MEME have the sameperformance.
  3. 3. Total number of TFs for a species.
  4. 4. Wilcoxon signed-rank test p-value.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us