Table 3 Selected pathways from the functional analysis
From: Differential expression analysis for paired RNA-seq data
Term | Â | Count | p-value |
|---|---|---|---|
Cluster 1 | score: 11.39 | Â | Â |
Defense response | GO:0006952 | 106 | 5.3E-14 |
Response to wonding | GO:0006954 | 90 | 1.3E-11 |
Inflammatory response | GO:0009611 | 63 | 1.0E-10 |
Cluster 2 | score: 5.43 | Â | Â |
Response to molecule of lipopolysaccharide | GO:0002237 | 23 | 9.4E-8 |
Response to cytokine stimulus | GO:0034097 | 18 | 8.0E-5 |
Response to bacterium | GO:0009617 | 31 | 3.5E-4 |
Cluster 3 | score: 5.19 | Â | Â |
Regulation of cytokine production | GO:0001817 | 41 | 2.9E-9 |
Positive regulation of cytokine production | GO:0001819 | 20 | 8.0E-5 |
positive regulation of multicellular organismal process | GO:0051240 | 35 | 1.1E-3 |
Cluster 8 | score: 2.89 | Â | Â |
Regulation of apoptosis | GO:0042981 | 100 | 1.0E-5 |
Regulation of programmed cell death | GO:0043067 | 100 | 1.5E-5 |
Regulation of cell death | GO:0010941 | 100 | 1.8E-5 |
Cluster 10 | score: 2.72 | Â | Â |
Leukocyte activation | GO:0045321 | 41 | 9.2E-6 |
Cell activation | GO:0001775 | 46 | 1.1E-5 |
T cell activation | GO:0046649 | 26 | 2.0E-5 |