Ensemble-based prediction of RNA secondary structures

BMC Bioinformatics

Table 3 Pairwise permutation tests between prediction algorithms

	AveRNA	BL-FR^∗	BL^∗	CG^∗	DIM-CG	NOM-CG	CONTRAfold2.0	CentroidFold	MaxExpect	CONTRAfold1.1
AveRNA
BL-FR*	0
BL*	0	0
CG*	0	0	0.0001
DIM-CG	0	0	0	0.0002
NOM-CG	0	0	0	0	0
CONTRAfold2.0	0	0	0	0	0.0001	0.4193
CentroidFold	0	0	0	0	0	0.0001	0
MaxExpect	0	0	0	0	0	0	0	0
CONTRAfold1.1	0	0	0	0	0	0	0	0	0
T99	0	0	0	0	0	0	0	0	0	0.1317

P-values obtained from permutation tests to determine the statistical significance of performance differences (in terms of F-measure over the S-STRAND2 dataset) between prediction algorithms. All p-values larger than a standard significance threshold of 0.05 are bolded, indicating cases where the performance differences are insignificant.

ISSN: 1471-2105