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Table 5 Ablation analysis results

From: Ensemble-based prediction of RNA secondary structures

 

0

1

2

3

4

5

6

7

8

9

BL-FR*

40.8030

         

BL*

3.4339

36.1240

        

CG*

0.5814

28.3500

23.6200

       

DIM-CG

13.3610

2.2809

18.8470

25.2980

      

NOM-CG

0

1.4514

7.5372

19.4300

29.6720

     

CONTRAfold2.0

7.9964

20.2750

24.4660

25.1060

34.6240

48.6310

    

CentroidFold

6.7425

0.0103

16.4620

15.9370

4.8337

11.1500

48.8500

   

MaxExpect

18.0520

0

3.8522

14.2290

18.5270

24.7580

5.6026

24.0080

  

CONTRAfold1.1

1.8412

8.4554

0

0

3.3164

5.2330

16.9320

42.9650

62.8050

 

T99

7.1883

3.0532

5.2156

0

9.0275

10.2280

28.6160

33.0280

37.1950

100

Threshold

42.7290

38.8610

35.6670

36.8770

31.2980

34.4810

31.6520

50

50

50

F (train)

0.7350

0.7163

0.7106

0.7052

0.7002

0.6889

0.6798

0.6640

0.6271

0.6188

F (test)

0.7158

0.7050

0.6948

0.6886

0.6842

0.6718

0.6629

0.6423

0.6011

0.5967

  1. Each data column corresponds to one stage of the ablation analysis, with the (optimised) weights of each prediction algorithm included in the ensemble shown in the top part of the table, followed by the (optimised) pairing threshold and the training and testing performance (in terms of mean F-measure) in the bottom part.
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BMC Bioinformatics

ISSN: 1471-2105

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