Figure 3

Number of PFMs, hits and promoters for different p-value cutoffs. The number of hits (red), number of affected promoters (green) and number of hit producing PMFs (blue) depend on the p-value cutoff. Note that the percentage of hits are plotted on the logarithmic scale (right side). The 100% baseline corresponds to the values obtained without any P-value cutoff, i.e. all possible positions for a hit, all promoters and all PFMs respectively.