From: CNV-TV: A robust method to discover copy number variation from short sequencing reads
CNVs | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
---|---|---|---|---|---|---|---|---|---|---|
CNV-seq | 0.74 | 0.73 | 0.64 | 0.62 | 0.53 | 0.42 | 0.40 | 0.30 | 0.05 | 0.04 |
FREEC | 0.88 | 0.83 | 0.65 | 0.64 | 0.63 | 0.63 | 0.53 | 0.53 | 0.48 | 0.43 |
readDepth | 0.81 | 0.80 | 0.79 | 0.75 | 0.74 | 0.71 | 0.71 | 0.64 | 0.62 | 0.57 |
CNVnator | 0.92 | 0.90 | 0.88 | 0.84 | 0.82 | 0.82 | 0.79 | 0.78 | 0.77 | 0.73 |
SegSeq | 0.93 | 0.91 | 0.89 | 0.59 | 0.57 | 0.55 | 0.48 | 0.45 | 0.45 | 0.45 |
EWT | 0.93 | 0.92 | 0.78 | 0.77 | 0.73 | 0.64 | 0.58 | 0.56 | 0.41 | 0.24 |
CNV-TV | 0.92 | 0.86 | 0.81 | 0.79 | 0.78 | 0.74 | 0.74 | 0.69 | 0.58 | 0.57 |