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Table 1 Number of significant genes for the ApoAI knockout experiment

From: Separate-channel analysis of two-channel microarrays: recovering inter-spot information

FDR

Log-ratio

Separate channel

0.01

8

8

0.05

8

8

0.10

8

15

0.25

9

53

  1. The second and third columns show the number of genes declared differently expressed at various FDR levels by the log-ratio and separate channel analyses respectively. FDRs were estimated using the qvalue package. The separate channel analysis detects more significant genes.
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BMC Bioinformatics

ISSN: 1471-2105

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