From: Incorporating time-delays in S-System model for reverse engineering genetic networks
Considering 6-gene subnetwork | Considering 8-gene subnetwork | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
True | Proposed | REGARD | S-Tree | NGnet | Kimura | Proposed | ALG | Perrin | BANJO | GlobalMIT | BITGRN2 |
positives | (TDSS) | [19] | [39] | [46] | et al[53] | (TDSS) | [34] | et al[47] | [43] | [23] | [24] |
lexA⊣recA | √ | √ | √ | √ | ⋆ | √ | √ | √ | √ | √ | |
lexA⊣lexA | √ | √ | √ | √ | ⋆ | √ | √ | √ | |||
lexA⊣umuD | √ | √ | √ | √ | ⋆ | √ | √ | √ | √ | ||
lexA⊣uvrD | √ | √ | √ | ⋆ | √ | √ | √ | ||||
lexA⊣uvrA | √ | √ | √ | ⋆ | √ | √ | √ | √ | √ | √ | |
lexA⊣polB | √ | √ | √ | ⋆ | √ | √ | |||||
recA→lexA | √ | ⋆ | ⋆ | √ | √ | √ | |||||
lexA⊣uvrY | √ | √ | |||||||||
lexA⊣ruvA | |||||||||||
Total TP inferred | 6 | 5 | 6 | 5 | 0 | 7 | 6 | 4 | 2 | 5 | 4 |
Novel Interactions | |||||||||||
umuD→lexA | √ | √ | ⋆ | √ | √ | √ | √ | ||||
uvrA⊣lexA | √ | √ | ⋆ | √ | √ | √ | |||||
uvrA⊣recA | √ | ⋆ | ⋆ | √ | √ | √ | |||||
Total Novel Interactions | 2 | 2 | 1 | 0 | 1 | 2 | 1 | 3 | 1 | 2 | 0 |