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Table 4 Comparison of individual and Boolean combination filtering criteria for accepting probesets into an analysis dataset

From: A decision theory paradigm for evaluating identifier mapping and filtering methods using data integration

Accepted by…

nPairs

Pr(+)

Utrue

Lfalse

EU mean

EU total

Affytag

348

0.493

0.986

0.507

0.479

167

PdbA30

658

0.518

1.04

0.482

0.553

364

Jetset

434

0.539

1.08

0.461

0.617

268

PdbA30 and Jetset

357

0.63

1.26

0.37

0.891

318

PdbA30 or Jetset

735

0.478

0.955

0.522

0.433

318

(No filtering)

887

0.431

0.862

0.569

0.293

260

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BMC Bioinformatics

ISSN: 1471-2105

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