From: CELDA - an ontology for the comprehensive representation of cells in complex systems
Class | Information types | Ontologies | Other datasources |
---|---|---|---|
Cell types | • Names and description of cell types | • CL [10] |  |
Cell lines | • Names and description of cell lines | • CLO [11] | • hESCReg [6] |
• EFO [28] | • Characterization Tool [4] | ||
Biological function | • Biological function | • EFO |  |
• Molecular processs | • GO [29] | ||
Histology | • Components and substructures | • CL | • hESCreg |
• Morphology | • GO | ||
• GO_XP_ALL [30] | |||
• Cellular_component_xp_self [30] | |||
• Cellular_component_xp_go [30] | |||
• Cellular_component_xp_cell [30] | |||
Lineage | • In vitro: origin cell | • CL | • hESCreg |
• In vivo: developmental tree | • CLO | ||
• EFO | |||
Marker/Gene Expression | • Expressed genes | • Biological_process_xp_cell [30] | • Characterization Tool |
• Biological _process_xp_uber_anatomy [30] | • hESCreg | ||
• Biological_process_xp_multi_organism_process [30] | |||
• Biological_process_xp_self [30] | |||
• Biological_process_xp_cellular_component [30] | |||
Origin | • In vivo: anatomical location in tissue/organ | • CLO | • hESCreg |
• In vitro: environmental clue | • CL | ||
• Species | • FMA [12] | ||
• Gender | • MA [14] | ||
• Age | • UBERON [31] | ||
• Developmental stage | • EHDAA [13] | ||
 |  | • uberon_anatomy_ontologies_bridge [32] |  |