From: MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters
Name1 | Gene | Position2 | Strand | S 1 3 | S 2 3 | CS | p-value | Sequence |
---|---|---|---|---|---|---|---|---|
Original composite element sequence | ATGAGGCAAT cggcact GTTGCCACAT | |||||||
uc002uum.1 | MOB4 | −346 | + | 0.972 | 0.976 | 0.012 | 3.801e-06 | AGTTTGCGAAAAT gctgtg GTTTCTTAAGAGA |
uc003jwu.1 | OCLN | −213 | + | 0.973 | 0.949 | 0.202 | 9.234e-05 | AGATTCAGAAACA gcgccaatg TTTACACACGACT |
uc003qcg.1 | EPB41L2 | −100 | + | 0.988 | 0.981 | 0.099 | 1.418e-06 | AGATTTTGAAATG ctac TTTTCACAAAATA |
uc001iia.1 | NET1 | −369 | + | 0.991 | 0.765 | 0.207 | 1.091e-05 | ACCTTTGGTAATT ggaaat ATATCTCATATTG |
uc002eby.1 | ZNF843 | −352 | + | 0.963 | 0.929 | 0.123 | 1.895e-04 | AGCCTAGGCAAAA gagcacg ATTCCGTCTCAAG |
uc004dpe.1 | SHROOM4 | +3 | + | 0.961 | 0.915 | 0.140 | 3.402e-04 | TGCTATTGTAAAT ggaactg TTTTCTTTCTTTC |
Sequence complementary to the original composite element sequence | ATGTGGCAAC agtgccg ATTGCCTCAT | |||||||
uc003edg.1 | C3orf15 | −317 | - | 0.946 | 0.959 | 0.110 | 1.347e-04 | TGGCTGAGAAAAT caatgac ATTGCTTATGAAA |
uc003fsb.1 | TP63 | −345 | - | 0.924 | 0.972 | 0.228 | 2.397e-04 | ACAAAGAGTAAAA agaaaag TTTTCATAAAGGA |
uc003gno.1 | C1QTNF7 | −27 | - | 0.947 | 0.997 | 0.234 | 4.040e-06 | AAACTGAGAAAGA taa CTTTCTGAAATGC |
uc003xye.1 | SULF1 | −333 | - | 0.728 | 0.987 | 0.304 | 1.456e-04 | AAAGAAAGGTAGG ca GTTGCAAAACTTC |
uc002tah.1 | AFF3 | −149 | - | 0.922 | 0.993 | 0.046 | 4.600e-06 | TCAGAAGGAAAAA agtttag ATTTCAAAATGTA |
uc003sli.1 | MAD1L1 | +2 | - | 0.761 | 0.981 | 0.276 | 1.790e-04 | TGTCTAGGGGAGA taaaat CTTGCCTAAGCAA |
uc003zwl.1 | KIAA1539 | −310 | - | 0.760 | 0.959 | 0.300 | 8.385e-04 | CTCCGTAGTCACC agatttt ATTTCACAAGGTG |
uc001lwy.1 | SLC22A18 | −113 | - | 0.939 | 0.965 | 0.167 | 1.691e-04 | CGCTCCCGGAACT tccat TTTACATATGAGG |
uc001wpn.1 | SDR39U1 | −12 | - | 0.767 | 0.993 | 0.313 | 3.045e-05 | TTAGTGAGACAAT ggcg ATTGCAAAGCGCG |
uc004env.1 | COL4A6 | −44 | - | 0.752 | 0.981 | 0.285 | 2.156e-04 | TGAGATGGACATT ttattttt ATTGCCTAAACTG |