Table 6 Number of SNVs called by the SOAPsnp with different cutoffs of consensus score
From: Comparing a few SNP calling algorithms using low-coverage sequencing data
Cutoffs | SNVs | dbSNPs | Non-dbSNPs | SNVs ≥ * |
|---|---|---|---|---|
=0 | 41 | 10 | 31 | 968 |
=1 | 8 | 2 | 6 | 927 |
=2 | 11 | 5 | 6 | 919 |
=3 | 6 | 2 | 4 | 908 |
=4 | 25 | 8 | 17 | 902 |
=5 | 261 | 179 | 82 | 877 |
=6 | 125 | 101 | 24 | 616 |
=7 | 21 | 13 | 8 | 491 |
=8 | 58 | 36 | 22 | 470 |
=9 | 24 | 12 | 12 | 412 |
=10 | 13 | 4 | 9 | 388 |