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Table 7 MAST results for the existence of predicted MEME motifs in substrate families

From: Transferring functional annotations of membrane transporters on the basis of sequence similarity and sequence motifs

 

Ec- At

Ec- Sc

Sc- At

1e-20

1e-16

1e-12

1e-8

1e-4

1e-20

1e-16

1e-12

1e-8

1e-4

1e-20

1e-16

1e-12

1e-8

1e-4

Precision [%]

37.5

37.5

52.8

39.8

25.0

34.7

56.3

52.2

34.9

25.1

82.9

81.5

49.4

30.2

25.0

Recall [%]

37.5

37.5

73.2

48.7

44.2

41.7

81.5

85.5

50.4

40.3

96.7

93.0

79.7

39.3

31.7

F-measure[%]

37.5

37.5

61.3

43.8

30.1

37.9

58.5

60.2

40.9

29.4

87.7

85.9

58.8

30.3

27.3

Unclassified [%]

95.8

94.4

80.6

9.7

0.0

90.3

75.0

59.7

9.7

0.0

68.7

55.3

52.0

0.0

0.0

  1. MAST results searching for up to 3 motifs predicted by MEME in each substrate family from Sc and At. Most members of the substrate families were correctly classified for threshold (1e-4) but only with a very low accuracy.