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Table 8 Enriched sequence motifs in At sugar transporters

From: Transferring functional annotations of membrane transporters on the basis of sequence similarity and sequence motifs

Approximate position

Regular expressions

420

F[AS][WI][GS][WM]GP[LVI][GP]W[LVI][VI]PSEIFPL[ER][IL]R[SGA]A[GA][QG][SA][IL]A[VA][SAL]VN[WM][IFV]F[TNS]F[IL][IV][AGT]Q[SAT]FLS[ML]L[CE][AH]

150

F[LFI]IG[AS][LI][LV][MN][AG]FAPNVA[MV]LI[IV]GR[LI]L[LA]G[FI]G[VI]G[FL][AG][NS][QM]A[VA]P[VL]Y[IL][SA]E[IM][AS]PAKIRG[AG]

300

[GA][VI]G[LI][QP]F[FL]QQ[LF][TS]GIN[AV][VI][ML][FY]Y[AS]P[VT][IL]F[QK][TK]AGF

  1. Regular expressions of the three motifs predicted in At sugar transporters that lead to correct predictions of 22 Sc sugar transporters at the second-strictest threshold of 1e-16.
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BMC Bioinformatics

ISSN: 1471-2105

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