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Table 6 Summary of the mean and standard deviation of the read lengths from 454 pyrosequencing of serotypes 1, 3 and 4 of the dengue virus obtained from lab cultures in Thailand

From: Viral quasispecies inference from 454 pyrosequencing

Serotype

Mean

SD

QuasQ

ShoRAH

QuRe

ViSpA

ViSpA (Corrected)

QuasiRecomb (No recomb)

QuasiRecomb (With recomb)

1

224.1

52.7

7

203

1

566

2

91

90

3

223.7

51.7

33

205

2

516

4

24

23

4

209.9

61.6

68

145

2

188

3

-

-

  1. The last seven columns show the number of constructed haplotypes from QuasQ, ShoRAH, QuRe, ViSpA, ViSpA (with ShoRAH corrected reads), QuasiRecomb (no recombination) and QuasiRecomb (with recombination).
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BMC Bioinformatics

ISSN: 1471-2105

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